Detailed information of SNP:
|
SNP ID:
sf0222677390(Gbrowse)
Chromosome: chr02 Position: 22677390 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.35% | 49.65% |
| All Indica | 797 | 81.81% | 18.19% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222677390 | G->A | INTERGENIC | None |