Detailed information of SNP:
|
SNP ID:
sf0222677991(Gbrowse)
Chromosome: chr02 Position: 22677991 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 53.90% | 46.10% |
| All Indica | 793 | 83.86% | 16.14% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 83.65% | 16.35% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222677991 | A->G | INTERGENIC | None |