Detailed information of SNP:
|
SNP ID:
sf0222679084(Gbrowse)
Chromosome: chr02 Position: 22679084 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.35% | 46.65% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222679084 | T->C | INTERGENIC | None |