Detailed information of SNP:
|
SNP ID:
sf0222679583(Gbrowse)
Chromosome: chr02 Position: 22679583 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.07% | 49.93% |
| All Indica | 798 | 81.70% | 18.30% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222679583 | A->C | INTERGENIC | None |