Detailed information of SNP:
|
SNP ID:
sf0222680753(Gbrowse)
Chromosome: chr02 Position: 22680753 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 91.83% | 8.17% |
| All Indica | 776 | 85.70% | 14.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 361 | 78.12% | 21.88% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 204 | 87.75% | 12.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222680753 | G->A | INTERGENIC | None |