Detailed information of SNP:
|
SNP ID:
sf0222681341(Gbrowse)
Chromosome: chr02 Position: 22681341 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 96.04% | 3.96% |
| All Indica | 794 | 97.86% | 2.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222681341 | A->C | INTERGENIC | None |