Detailed information of SNP:
|
SNP ID:
sf0222687487(Gbrowse)
Chromosome: chr02 Position: 22687487 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 96.32% | 3.68% |
| All Indica | 794 | 98.24% | 1.76% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222687487 | A->C | LOC_Os02g37600(LOC_Os02g37600.2) | UTR_3_PRIME |
| sf0222687487 | A->C | LOC_Os02g37600(LOC_Os02g37600.1) | INTRON |