Detailed information of SNP:
|
SNP ID:
sf0222689426(Gbrowse)
Chromosome: chr02 Position: 22689426 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.85% | 46.15% |
| All Indica | 799 | 83.60% | 16.40% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222689426 | G->A | INTERGENIC | None |