Detailed information of SNP:
|
SNP ID:
sf0222690313(Gbrowse)
Chromosome: chr02 Position: 22690313 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.64% | 49.36% |
| All Indica | 799 | 82.85% | 17.15% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222690313 | G->A | INTERGENIC | None |