Detailed information of SNP:
|
SNP ID:
sf0222694177(Gbrowse)
Chromosome: chr02 Position: 22694177 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 54.03% | 45.97% |
| All Indica | 796 | 84.05% | 15.95% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 83.91% | 16.09% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222694177 | A->G | INTERGENIC | None |