Detailed information of SNP:
|
SNP ID:
sf0222697021(Gbrowse)
Chromosome: chr02 Position: 22697021 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 90.46% | 9.54% |
| All Indica | 714 | 84.73% | 15.27% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 58 | 86.21% | 13.79% |
| Indica I | 334 | 82.34% | 17.66% |
| Indica II | 188 | 88.83% | 11.17% |
| Indica Intermediate | 192 | 84.90% | 15.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222697021 | C->T | LOC_Os02g37620(LOC_Os02g37620.1) | Non-Synonymous SNP |