Detailed information of SNP:
|
SNP ID:
sf0222697284(Gbrowse)
Chromosome: chr02 Position: 22697284 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 90.97% | 9.03% |
| All Indica | 751 | 86.68% | 13.32% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 58 | 79.31% | 20.69% |
| Indica I | 347 | 87.32% | 12.68% |
| Indica II | 202 | 88.12% | 11.88% |
| Indica Intermediate | 202 | 84.16% | 15.84% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222697284 | G->A | LOC_Os02g37620(LOC_Os02g37620.1) | INTRON |