Detailed information of SNP:
|
SNP ID:
sf0222703336(Gbrowse)
Chromosome: chr02 Position: 22703336 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 60.71% | 39.29% |
| All Indica | 795 | 36.10% | 63.90% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 372 | 26.61% | 73.39% |
| Indica II | 212 | 41.51% | 58.49% |
| Indica Intermediate | 211 | 47.39% | 52.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222703336 | G->A | LOC_Os02g37630(LOC_Os02g37630.1) | Synonymous |