Detailed information of SNP:
|
SNP ID:
sf0222703381(Gbrowse)
Chromosome: chr02 Position: 22703381 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.32% | 46.68% |
| All Indica | 796 | 28.14% | 71.86% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 18.18% | 81.82% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222703381 | A->G | LOC_Os02g37630(LOC_Os02g37630.1) | Synonymous |