Detailed information of SNP:
|
SNP ID:
sf0222703650(Gbrowse)
Chromosome: chr02 Position: 22703650 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.74% | 46.26% |
| All Indica | 798 | 29.07% | 70.93% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 18.72% | 81.28% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222703650 | A->T | LOC_Os02g37630(LOC_Os02g37630.1) | INTRON |