Detailed information of SNP:
|
SNP ID:
sf0222706813(Gbrowse)
Chromosome: chr02 Position: 22706813 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.95% | 44.05% |
| All Indica | 792 | 32.07% | 67.93% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 371 | 22.64% | 77.36% |
| Indica II | 212 | 39.62% | 60.38% |
| Indica Intermediate | 209 | 41.15% | 58.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222706813 | C->T | LOC_Os02g37630(LOC_Os02g37630.1) | INTRON |