Detailed information of SNP:



SNP ID: sf0222709270(Gbrowse)

Chromosome: chr02

Position: 22709270
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1419 57.72% 42.28%
All Indica799 35.79% 64.21%
All Japonica497 99.20% 0.80%
Aus67 4.48% 95.52%
Indica I375 18.13% 81.87%
Indica II213 61.03% 38.97%
Indica Intermediate211 41.71% 58.29%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222709270 A->C INTERGENIC None