Detailed information of SNP:
|
SNP ID:
sf0222710177(Gbrowse)
Chromosome: chr02 Position: 22710177 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 58.98% | 41.02% |
| All Indica | 763 | 73.66% | 26.34% |
| All Japonica | 399 | 22.56% | 77.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 93.68% | 6.32% |
| Indica II | 201 | 41.29% | 58.71% |
| Indica Intermediate | 198 | 69.70% | 30.30% |
| Temperate Japonica | 268 | 14.55% | 85.45% |
| Tropical Japonica | 79 | 45.57% | 54.43% |
| Japonica Intermediate | 52 | 28.85% | 71.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222710177 | A->G | INTERGENIC | None |