Detailed information of SNP:
|
SNP ID:
sf0222711727(Gbrowse)
Chromosome: chr02 Position: 22711727 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.62% | 42.38% |
| All Indica | 798 | 35.96% | 64.04% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.40% | 81.60% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222711727 | A->G | INTERGENIC | None |