Detailed information of SNP:
|
SNP ID:
sf0222711805(Gbrowse)
Chromosome: chr02 Position: 22711805 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.71% | 3.29% |
| All Indica | 792 | 97.10% | 2.90% |
| All Japonica | 486 | 95.47% | 4.53% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 98.64% | 1.36% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 328 | 96.95% | 3.05% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222711805 | C->T | INTERGENIC | None |