Detailed information of SNP:
|
SNP ID:
sf0222712102(Gbrowse)
Chromosome: chr02 Position: 22712102 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.28% | 41.72% |
| All Indica | 799 | 36.80% | 63.20% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 20.27% | 79.73% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222712102 | A->G | INTERGENIC | None |