Detailed information of SNP:
|
SNP ID:
sf0222713700(Gbrowse)
Chromosome: chr02 Position: 22713700 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.31% | 42.69% |
| All Indica | 797 | 35.38% | 64.62% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.40% | 81.60% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222713700 | G->A | INTERGENIC | None |