Detailed information of SNP:
|
SNP ID:
sf0222716086(Gbrowse)
Chromosome: chr02 Position: 22716086 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 59.96% | 40.04% |
| All Indica | 791 | 36.79% | 63.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 36 | 13.89% | 86.11% |
| Indica I | 373 | 19.84% | 80.16% |
| Indica II | 210 | 62.38% | 37.62% |
| Indica Intermediate | 208 | 41.35% | 58.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222716086 | C->T | INTERGENIC | None |