Detailed information of SNP:
|
SNP ID:
sf0222716127(Gbrowse)
Chromosome: chr02 Position: 22716127 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.68% | 39.32% |
| All Indica | 799 | 36.55% | 63.45% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222716127 | C->T | INTERGENIC | None |