Detailed information of SNP:
SNP ID:
sf0222717269(Gbrowse)
Chromosome: chr02 Position: 22717269 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 57.76% | 42.24% |
All Indica | 798 | 35.96% | 64.04% |
All Japonica | 497 | 99.20% | 0.80% |
Aus | 67 | 4.48% | 95.52% |
Indica I | 374 | 18.45% | 81.55% |
Indica II | 213 | 61.03% | 38.97% |
Indica Intermediate | 211 | 41.71% | 58.29% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0222717269 | T->C | LOC_Os02g37654(LOC_Os02g37654.1) | Non-Synonymous SNP |