Detailed information of SNP:
|
SNP ID:
sf0222718123(Gbrowse)
Chromosome: chr02 Position: 22718123 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 798 | 35.71% | 64.29% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 210 | 40.95% | 59.05% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222718123 | A->G | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |