Detailed information of SNP:
|
SNP ID:
sf0222718142(Gbrowse)
Chromosome: chr02 Position: 22718142 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.87% | 42.13% |
| All Indica | 798 | 36.09% | 63.91% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 19.20% | 80.80% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222718142 | T->C | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |