Detailed information of SNP:
|
SNP ID:
sf0222719134(Gbrowse)
Chromosome: chr02 Position: 22719134 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 87.32% | 12.68% |
| All Indica | 790 | 82.78% | 17.22% |
| All Japonica | 491 | 92.87% | 7.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 207 | 54.11% | 45.89% |
| Indica Intermediate | 209 | 81.34% | 18.66% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222719134 | C->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |