Detailed information of SNP:
|
SNP ID:
sf0222719172(Gbrowse)
Chromosome: chr02 Position: 22719172 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.93% | 39.07% |
| All Indica | 798 | 36.84% | 63.16% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222719172 | T->A | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |