Detailed information of SNP:
|
SNP ID:
sf0222720072(Gbrowse)
Chromosome: chr02 Position: 22720072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 799 | 35.79% | 64.21% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222720072 | A->G | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |