Detailed information of SNP:



SNP ID: sf0222720158(Gbrowse)

Chromosome: chr02

Position: 22720158
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 57.43% 42.57%
All Indica799 35.67% 64.33%
All Japonica497 98.79% 1.21%
Aus67 4.48% 95.52%
Indica I375 18.40% 81.60%
Indica II213 61.03% 38.97%
Indica Intermediate211 40.76% 59.24%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222720158 T->C LOC_Os02g37654(LOC_Os02g37654.1) INTRON