Detailed information of SNP:



SNP ID: sf0222720694(Gbrowse)

Chromosome: chr02

Position: 22720694
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1416 57.06% 42.94%
All Indica797 34.88% 65.12%
All Japonica497 98.79% 1.21%
Aus67 5.97% 94.03%
Indica I375 18.67% 81.33%
Indica II211 59.72% 40.28%
Indica Intermediate211 38.86% 61.14%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 78.57% 21.43%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222720694 A->G LOC_Os02g37654(LOC_Os02g37654.1) INTRON