Detailed information of SNP:
|
SNP ID:
sf0222720882(Gbrowse)
Chromosome: chr02 Position: 22720882 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 36.55% | 63.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222720882 | G->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |