Detailed information of SNP:
|
SNP ID:
sf0222721083(Gbrowse)
Chromosome: chr02 Position: 22721083 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.59% | 39.41% |
| All Indica | 796 | 36.43% | 63.57% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 18.45% | 81.55% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222721083 | C->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |