Detailed information of SNP:
|
SNP ID:
sf0222721117(Gbrowse)
Chromosome: chr02 Position: 22721117 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.55% | 39.45% |
| All Indica | 797 | 36.26% | 63.74% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 18.40% | 81.60% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 209 | 42.11% | 57.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222721117 | T->G | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |