Detailed information of SNP:



SNP ID: sf0222721347(Gbrowse)

Chromosome: chr02

Position: 22721347
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1418 57.55% 42.45%
All Indica798 35.46% 64.54%
All Japonica497 99.20% 0.80%
Aus67 4.48% 95.52%
Indica I375 18.40% 81.60%
Indica II213 61.03% 38.97%
Indica Intermediate210 40.00% 60.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222721347 G->T LOC_Os02g37654(LOC_Os02g37654.1) INTRON