Detailed information of SNP:
|
SNP ID:
sf0222721950(Gbrowse)
Chromosome: chr02 Position: 22721950 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.56% | 43.44% |
| All Indica | 798 | 34.34% | 65.66% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 16.27% | 83.73% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222721950 | A->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |