Detailed information of SNP:
|
SNP ID:
sf0222722077(Gbrowse)
Chromosome: chr02 Position: 22722077 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 58.00% | 42.00% |
| All Indica | 784 | 35.71% | 64.29% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 4.69% | 95.31% |
| Indica I | 369 | 18.70% | 81.30% |
| Indica II | 211 | 61.14% | 38.86% |
| Indica Intermediate | 204 | 40.20% | 59.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222722077 | T->C | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |