Detailed information of SNP:
|
SNP ID:
sf0222723221(Gbrowse)
Chromosome: chr02 Position: 22723221 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 58.54% | 41.46% |
| All Indica | 781 | 36.88% | 63.12% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 363 | 19.28% | 80.72% |
| Indica II | 210 | 61.43% | 38.57% |
| Indica Intermediate | 208 | 42.79% | 57.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222723221 | A->G | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |