Detailed information of SNP:
|
SNP ID:
sf0222723263(Gbrowse)
Chromosome: chr02 Position: 22723263 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 97.09% | 2.91% |
| All Indica | 774 | 95.09% | 4.91% |
| All Japonica | 448 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 202 | 91.09% | 8.91% |
| Indica Intermediate | 203 | 90.64% | 9.36% |
| Temperate Japonica | 301 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222723263 | G->A | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |