Detailed information of SNP:
|
SNP ID:
sf0222723624(Gbrowse)
Chromosome: chr02 Position: 22723624 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 56.61% | 43.39% |
| All Indica | 777 | 71.56% | 28.44% |
| All Japonica | 454 | 26.21% | 73.79% |
| Aus | 44 | 95.45% | 4.55% |
| Indica I | 366 | 92.62% | 7.38% |
| Indica II | 209 | 40.19% | 59.81% |
| Indica Intermediate | 202 | 65.84% | 34.16% |
| Temperate Japonica | 304 | 21.71% | 78.29% |
| Tropical Japonica | 87 | 43.68% | 56.32% |
| Japonica Intermediate | 63 | 23.81% | 76.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 52.94% | 47.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222723624 | T->G | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |