Detailed information of SNP:
|
SNP ID:
sf0222723928(Gbrowse)
Chromosome: chr02 Position: 22723928 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 81.19% | 18.81% |
| All Indica | 700 | 69.29% | 30.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 310 | 60.32% | 39.68% |
| Indica II | 202 | 83.17% | 16.83% |
| Indica Intermediate | 188 | 69.15% | 30.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222723928 | C->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |