Detailed information of SNP:
|
SNP ID:
sf0222723988(Gbrowse)
Chromosome: chr02 Position: 22723988 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 75.58% | 24.42% |
| All Indica | 716 | 59.78% | 40.22% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 321 | 47.98% | 52.02% |
| Indica II | 197 | 78.68% | 21.32% |
| Indica Intermediate | 198 | 60.10% | 39.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222723988 | C->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |