Detailed information of SNP:
|
SNP ID:
sf0222724135(Gbrowse)
Chromosome: chr02 Position: 22724135 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 62.72% | 37.28% |
| All Indica | 789 | 42.71% | 57.29% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 54 | 12.96% | 87.04% |
| Indica I | 368 | 27.17% | 72.83% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 209 | 48.80% | 51.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222724135 | A->G | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |