Detailed information of SNP:
|
SNP ID:
sf0222724173(Gbrowse)
Chromosome: chr02 Position: 22724173 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 67.08% | 32.92% |
| All Indica | 760 | 46.18% | 53.82% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 348 | 30.75% | 69.25% |
| Indica II | 207 | 66.18% | 33.82% |
| Indica Intermediate | 205 | 52.20% | 47.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222724173 | G->A | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |