Detailed information of SNP:
|
SNP ID:
sf0222724206(Gbrowse)
Chromosome: chr02 Position: 22724206 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1218 | 84.40% | 15.60% |
| All Indica | 623 | 78.49% | 21.51% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 52 | 30.77% | 69.23% |
| Indica I | 277 | 70.40% | 29.60% |
| Indica II | 178 | 89.89% | 10.11% |
| Indica Intermediate | 168 | 79.76% | 20.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222724206 | A->G | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |