Detailed information of SNP:
|
SNP ID:
sf0222724240(Gbrowse)
Chromosome: chr02 Position: 22724240 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 90.78% | 9.22% |
| All Indica | 750 | 85.07% | 14.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 346 | 82.08% | 17.92% |
| Indica II | 203 | 90.15% | 9.85% |
| Indica Intermediate | 201 | 85.07% | 14.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222724240 | C->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |