Detailed information of SNP:
|
SNP ID:
sf0222724377(Gbrowse)
Chromosome: chr02 Position: 22724377 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 56.51% | 43.49% |
| All Indica | 794 | 34.26% | 65.74% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 17.11% | 82.89% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 208 | 38.94% | 61.06% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222724377 | T->A | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |