Detailed information of SNP:
|
SNP ID:
sf0222724611(Gbrowse)
Chromosome: chr02 Position: 22724611 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.28% | 41.72% |
| All Indica | 799 | 36.30% | 63.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222724611 | A->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |