Detailed information of SNP:
|
SNP ID:
sf0222725519(Gbrowse)
Chromosome: chr02 Position: 22725519 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.38% | 39.62% |
| All Indica | 797 | 36.39% | 63.61% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 18.45% | 81.55% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222725519 | C->T | LOC_Os02g37654(LOC_Os02g37654.1) | INTRON |